Super Enhancer Details

General details

Super-Enhancer ID:	SE_00778
Genomic locus:	chr17:1250530-1304158
Size/Length:	53628 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006761
Gene Symbol:	YWHAE
Chromosome:	chr17
TSS:	1247833 (Transcription start site)
TES:	1303556 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00778

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C002575	SE_00778	chr17	1250530	1252249	1719	215.53
C002576	SE_00778	chr17	1263429	1267525	4096	248.49
C002577	SE_00778	chr17	1268464	1271564	3100	255.63
C002578	SE_00778	chr17	1277398	1284825	7427	1306.03
C002579	SE_00778	chr17	1287923	1291574	3651	803.6
C002580	SE_00778	chr17	1292761	1296294	3533	991.37
C002581	SE_00778	chr17	1296530	1297996	1466	137.94
C002582	SE_00778	chr17	1300256	1304158	3902	3100