Super Enhancer Details

General details

Super-Enhancer ID:	SE_00779
Genomic locus:	chr6:129964205-130036379
Size/Length:	72174 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_033515
Gene Symbol:	ARHGAP18
Chromosome:	chr6
TSS:	129898239 (Transcription start site)
TES:	130031370 (Transcription end site)
Strand:	-
Number of Exons:	15
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00779

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C005235	SE_00779	chr6	129964205	129969313	5108	999.98
C005236	SE_00779	chr6	129980725	129982396	1671	109.1
C005237	SE_00779	chr6	129991497	129995297	3800	961.95
C005238	SE_00779	chr6	129999499	130009388	9889	2215.42
C005239	SE_00779	chr6	130016380	130018088	1708	180.28
C005240	SE_00779	chr6	130022553	130024529	1976	278.96
C005241	SE_00779	chr6	130028530	130032528	3998	2439.08
C005242	SE_00779	chr6	130034303	130036379	2076	203.75