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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00780
Genomic locus: chr11:63245997-63280310
Size/Length: 34313 bp
Genome: Mouse -
Cell/Tissue: Adipose Nuclei
Factor(s) Used: - (Used to define enhancers)
- (Used to rank SEs)
Input/WCE: GSM621401
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_054108
Gene Symbol: HRASLS5
Chromosome: chr11
TSS: 63228875 (Transcription start site)
TES: 63258680 (Transcription end site)
Strand: -
Number of Exons: 6
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00780

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C001247 SE_00780 chr11 63245997 63247371 1374 153.92
C001248 SE_00780 chr11 63254196 63263597 9401 3100
C001249 SE_00780 chr11 63271882 63280310 8428 3100