Super Enhancer Details

General details

Super-Enhancer ID:	SE_00781
Genomic locus:	chr11:122928788-122955873
Size/Length:	27085 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Nuclei
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM621401
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_006597
Gene Symbol:	HSPA8
Chromosome:	chr11
TSS:	122928199 (Transcription start site)
TES:	122933043 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:122928788-122955873
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00781

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C001488	SE_00781	chr11	122928788	122930642	1854	106.55
C001489	SE_00781	chr11	122930705	122935768	5063	3100
C001490	SE_00781	chr11	122939245	122941824	2579	377.6
C001491	SE_00781	chr11	122942160	122945455	3295	1277.94
C001492	SE_00781	chr11	122953328	122955873	2545	429.24