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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00782
Genomic locus: chr5:172193621-172234118
Size/Length: 40497 bp
Genome: Human - hg19
Cell/Tissue: Adipose Tissue
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM906416
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_004417
Gene Symbol: DUSP1
Chromosome: chr5
TSS: 172195092 (Transcription start site)
TES: 172198203 (Transcription end site)
Strand: -
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr5:172193621-172234118
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00782

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C006497 SE_00782 chr5 172193621 172193765 144 99.47
C006498 SE_00782 chr5 172194494 172194626 132 101.34
C006499 SE_00782 chr5 172194753 172194939 186 159.33
C006500 SE_00782 chr5 172195752 172196110 358 256.74
C006501 SE_00782 chr5 172196258 172196478 220 132.52
C006502 SE_00782 chr5 172196587 172196792 205 125.19
C006503 SE_00782 chr5 172196819 172198181 1362 1406.99
C006504 SE_00782 chr5 172198504 172199123 619 755.62
C006505 SE_00782 chr5 172199185 172199454 269 257.5
C006506 SE_00782 chr5 172200341 172200570 229 236.03
C006507 SE_00782 chr5 172200685 172200818 133 102.78
C006508 SE_00782 chr5 172201210 172201379 169 130.76
C006509 SE_00782 chr5 172202181 172202381 200 101.36
C006510 SE_00782 chr5 172202449 172202609 160 141.19
C006511 SE_00782 chr5 172203060 172203198 138 92.8
C006512 SE_00782 chr5 172204405 172204560 155 121
C006513 SE_00782 chr5 172216455 172216630 175 101.26
C006514 SE_00782 chr5 172226532 172226799 267 168.07
C006515 SE_00782 chr5 172227020 172227147 127 99.28
C006516 SE_00782 chr5 172227668 172227790 122 101.66
C006517 SE_00782 chr5 172233996 172234118 122 91.46