Super Enhancer Details

General details

Super-Enhancer ID:	SE_00783
Genomic locus:	chr11:65239089-65268114
Size/Length:	29025 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_002819
Gene Symbol:	MALAT1
Chromosome:	chr11
TSS:	65265232 (Transcription start site)
TES:	65273983 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00783

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006251	SE_00783	chr11	65239089	65239559	470	204.78
C006252	SE_00783	chr11	65244461	65245009	548	531.48
C006253	SE_00783	chr11	65245229	65245442	213	182.26
C006254	SE_00783	chr11	65246513	65246688	175	189.13
C006255	SE_00783	chr11	65256750	65256996	246	162.98
C006256	SE_00783	chr11	65257364	65257634	270	164.86
C006257	SE_00783	chr11	65257949	65258153	204	131.79
C006258	SE_00783	chr11	65258636	65258841	205	179
C006259	SE_00783	chr11	65259167	65259282	115	91.12
C006260	SE_00783	chr11	65259915	65260305	390	361.33
C006261	SE_00783	chr11	65260732	65261016	284	179.22
C006262	SE_00783	chr11	65264377	65264682	305	232.69
C006263	SE_00783	chr11	65265329	65266146	817	666.24
C006264	SE_00783	chr11	65267858	65268114	256	145.97