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Super Enhancer Details

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General details

Super-Enhancer ID: SE_00784
Genomic locus: chr19:12888747-12904374
Size/Length: 15627 bp
Genome: Human - hg19
Cell/Tissue: Adipose Tissue
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM906416
Reference: Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID: NM_002229
Gene Symbol: JUNB
Chromosome: chr19
TSS: 12902309 (Transcription start site)
TES: 12904125 (Transcription end site)
Strand: +
Number of Exons: 1
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence



>chr19:12888747-12904374
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00784

Constituent ID SE ID Chrom Start End Constituent Size MACS score
C006389 SE_00784 chr19 12888747 12888975 228 129.68
C006390 SE_00784 chr19 12889461 12889605 144 92.54
C006391 SE_00784 chr19 12889824 12889928 104 99.2
C006392 SE_00784 chr19 12894551 12894762 211 173
C006393 SE_00784 chr19 12896704 12896825 121 101.41
C006394 SE_00784 chr19 12896829 12896950 121 103.78
C006395 SE_00784 chr19 12899864 12900016 152 122
C006396 SE_00784 chr19 12900026 12900457 431 475.68
C006397 SE_00784 chr19 12900464 12900634 170 159.89
C006398 SE_00784 chr19 12900699 12900863 164 101.78
C006399 SE_00784 chr19 12901204 12902038 834 1066.82
C006400 SE_00784 chr19 12902591 12902835 244 277.9
C006401 SE_00784 chr19 12902896 12903030 134 109.98
C006402 SE_00784 chr19 12903078 12903756 678 727.04
C006403 SE_00784 chr19 12903830 12903996 166 138.96
C006404 SE_00784 chr19 12904252 12904374 122 96.53