Super Enhancer Details

General details

Super-Enhancer ID:	SE_00785
Genomic locus:	chr19:39888505-39901406
Size/Length:	12901 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003407
Gene Symbol:	ZFP36
Chromosome:	chr19
TSS:	39897486 (Transcription start site)
TES:	39900052 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>:-

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00785

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006420	SE_00785	chr19	39888505	39888789	284	203.22
C006421	SE_00785	chr19	39888791	39889066	275	266.87
C006422	SE_00785	chr19	39893403	39894008	605	548.52
C006423	SE_00785	chr19	39894060	39894286	226	183.93
C006424	SE_00785	chr19	39894846	39895038	192	167.79
C006425	SE_00785	chr19	39896299	39896497	198	123
C006426	SE_00785	chr19	39896987	39897310	323	183.55
C006427	SE_00785	chr19	39897469	39897992	523	389.79
C006428	SE_00785	chr19	39898077	39898326	249	150.3
C006429	SE_00785	chr19	39898430	39898648	218	127.08
C006430	SE_00785	chr19	39898664	39899473	809	862.97
C006431	SE_00785	chr19	39899506	39899761	255	174.67
C006432	SE_00785	chr19	39900172	39900380	208	175.15
C006433	SE_00785	chr19	39900512	39900832	320	228.18
C006434	SE_00785	chr19	39901207	39901406	199	123