Super Enhancer Details

General details

Super-Enhancer ID:	SE_00786
Genomic locus:	chr9:73026660-73036699
Size/Length:	10039 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001206
Gene Symbol:	KLF9
Chromosome:	chr9
TSS:	72999512 (Transcription start site)
TES:	73029573 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00786

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006544	SE_00786	chr9	73026660	73026837	177	97.89
C006545	SE_00786	chr9	73026923	73027538	615	598.17
C006546	SE_00786	chr9	73027540	73028913	1373	1828
C006547	SE_00786	chr9	73028995	73029272	277	213.8
C006548	SE_00786	chr9	73033322	73033813	491	643.21
C006549	SE_00786	chr9	73034189	73034415	226	153.47
C006550	SE_00786	chr9	73034437	73034933	496	406.59
C006551	SE_00786	chr9	73035203	73035326	123	136.44
C006552	SE_00786	chr9	73035360	73035731	371	591.24
C006553	SE_00786	chr9	73035738	73036699	961	810.48