Super Enhancer Details

General details

Super-Enhancer ID:	SE_00788
Genomic locus:	chr9:132244545-132259886
Size/Length:	15341 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_014064
Gene Symbol:	NTMT1
Chromosome:	chr9
TSS:	132388722 (Transcription start site)
TES:	132398410 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:132244545-132259886
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00788

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006572	SE_00788	chr9	132244545	132244698	153	95.29
C006573	SE_00788	chr9	132245282	132245899	617	621.44
C006574	SE_00788	chr9	132246128	132246508	380	337.42
C006575	SE_00788	chr9	132250056	132250177	121	116.76
C006576	SE_00788	chr9	132250256	132250698	442	415.75
C006577	SE_00788	chr9	132251157	132251434	277	214.37
C006578	SE_00788	chr9	132251960	132252414	454	355.05
C006579	SE_00788	chr9	132258014	132258195	181	156.12
C006580	SE_00788	chr9	132259698	132259886	188	135.96