Super Enhancer Details

General details

Super-Enhancer ID:	SE_00789
Genomic locus:	chr11:65185967-65192549
Size/Length:	6582 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_028272
Gene Symbol:	NEAT1
Chromosome:	chr11
TSS:	65190268 (Transcription start site)
TES:	65213009 (Transcription end site)
Strand:	+
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr11:65185967-65192549
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00789

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006240	SE_00789	chr11	65185967	65186241	274	241.99
C006241	SE_00789	chr11	65186652	65187182	530	635.3
C006242	SE_00789	chr11	65187481	65187729	248	209.28
C006243	SE_00789	chr11	65187822	65188027	205	151.84
C006244	SE_00789	chr11	65188296	65188607	311	287.53
C006245	SE_00789	chr11	65188872	65189719	847	1182.41
C006246	SE_00789	chr11	65189820	65190153	333	404.09
C006247	SE_00789	chr11	65190191	65190924	733	872.47
C006248	SE_00789	chr11	65190927	65191467	540	502.85
C006249	SE_00789	chr11	65191589	65192028	439	279.53
C006250	SE_00789	chr11	65192253	65192549	296	195.6