Super Enhancer Details

General details

Super-Enhancer ID:	SE_00790
Genomic locus:	chr19:1250877-1265873
Size/Length:	14996 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_177401
Gene Symbol:	MIDN
Chromosome:	chr19
TSS:	1248551 (Transcription start site)
TES:	1259142 (Transcription end site)
Strand:	+
Number of Exons:	8
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:1250877-1265873
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00790

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006365	SE_00790	chr19	1250877	1251124	247	153.68
C006366	SE_00790	chr19	1251153	1251332	179	132.43
C006367	SE_00790	chr19	1251599	1251712	113	92.52
C006368	SE_00790	chr19	1251755	1252341	586	476.7
C006369	SE_00790	chr19	1252509	1252954	445	391.15
C006370	SE_00790	chr19	1252961	1253070	109	118.74
C006371	SE_00790	chr19	1253566	1253768	202	226.4
C006372	SE_00790	chr19	1253868	1254041	173	124.97
C006373	SE_00790	chr19	1259418	1259657	239	164.76
C006374	SE_00790	chr19	1259663	1260008	345	237.39
C006375	SE_00790	chr19	1260344	1260494	150	92.54
C006376	SE_00790	chr19	1261898	1262023	125	93.85
C006377	SE_00790	chr19	1265752	1265873	121	91.26