Super Enhancer Details

General details

Super-Enhancer ID:	SE_00791
Genomic locus:	chr19:13950546-13962426
Size/Length:	11880 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NR_029495
Gene Symbol:	MIR23A
Chromosome:	chr19
TSS:	13947400 (Transcription start site)
TES:	13947473 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:13950546-13962426
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00791

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006408	SE_00791	chr19	13950546	13950873	327	253.57
C006409	SE_00791	chr19	13951045	13951358	313	305.53
C006410	SE_00791	chr19	13951379	13951735	356	213.35
C006411	SE_00791	chr19	13952061	13952227	166	141.27
C006412	SE_00791	chr19	13952299	13952457	158	95.26
C006413	SE_00791	chr19	13952839	13953036	197	112.61
C006414	SE_00791	chr19	13953421	13953629	208	202.6
C006415	SE_00791	chr19	13957172	13957626	454	281.93
C006416	SE_00791	chr19	13957784	13958202	418	364.93
C006417	SE_00791	chr19	13958231	13958551	320	294.14
C006418	SE_00791	chr19	13961433	13962030	597	379.38
C006419	SE_00791	chr19	13962168	13962426	258	159.06