Super Enhancer Details

General details

Super-Enhancer ID:	SE_00792
Genomic locus:	chr6:35693792-35700701
Size/Length:	6909 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001145775
Gene Symbol:	FKBP5
Chromosome:	chr6
TSS:	35541361 (Transcription start site)
TES:	35696360 (Transcription end site)
Strand:	-
Number of Exons:	12
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr6:35693792-35700701
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00792

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006518	SE_00792	chr6	35693792	35693906	114	105.46
C006519	SE_00792	chr6	35694349	35694680	331	348.18
C006520	SE_00792	chr6	35694738	35695841	1103	1377.29
C006521	SE_00792	chr6	35696054	35696630	576	497.08
C006522	SE_00792	chr6	35696631	35696848	217	161.99
C006523	SE_00792	chr6	35699358	35699760	402	506.24
C006524	SE_00792	chr6	35699786	35700203	417	312.89
C006525	SE_00792	chr6	35700328	35700701	373	294.14