Super Enhancer Details

General details

Super-Enhancer ID:	SE_00793
Genomic locus:	chr1:234735533-234749330
Size/Length:	13797 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_182972
Gene Symbol:	IRF2BP2
Chromosome:	chr1
TSS:	234740014 (Transcription start site)
TES:	234745271 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr1:234735533-234749330
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00793

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006199	SE_00793	chr1	234735533	234735646	113	108.84
C006200	SE_00793	chr1	234743017	234743206	189	145.97
C006201	SE_00793	chr1	234744173	234744816	643	528.02
C006202	SE_00793	chr1	234745221	234745371	150	110.48
C006203	SE_00793	chr1	234745412	234745561	149	137.1
C006204	SE_00793	chr1	234746251	234746558	307	262.56
C006205	SE_00793	chr1	234746922	234747354	432	429.47
C006206	SE_00793	chr1	234747486	234747607	121	118.73
C006207	SE_00793	chr1	234747709	234747865	156	153.99
C006208	SE_00793	chr1	234749133	234749330	197	142.04