Super Enhancer Details

General details

Super-Enhancer ID:	SE_00794
Genomic locus:	chr17:7737655-7748041
Size/Length:	10386 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_144607
Gene Symbol:	CYB5D1
Chromosome:	chr17
TSS:	7761063 (Transcription start site)
TES:	7765600 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:7737655-7748041
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00794

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006323	SE_00794	chr17	7737655	7737805	150	103.07
C006324	SE_00794	chr17	7738193	7738389	196	93.77
C006325	SE_00794	chr17	7738446	7738628	182	100.88
C006326	SE_00794	chr17	7739519	7739761	242	133.46
C006327	SE_00794	chr17	7745316	7745482	166	118.38
C006328	SE_00794	chr17	7745768	7746062	294	270.99
C006329	SE_00794	chr17	7746193	7746412	219	147.79
C006330	SE_00794	chr17	7746518	7747180	662	545.71
C006331	SE_00794	chr17	7747548	7747670	122	108.2
C006332	SE_00794	chr17	7747739	7748041	302	233.75