Super Enhancer Details

General details

Super-Enhancer ID:	SE_00795
Genomic locus:	chr19:45245366-45258409
Size/Length:	13043 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005178
Gene Symbol:	BCL3
Chromosome:	chr19
TSS:	45251977 (Transcription start site)
TES:	45263301 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr19:45245366-45258409
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00795

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006438	SE_00795	chr19	45245366	45245660	294	236.43
C006439	SE_00795	chr19	45248202	45248403	201	155.24
C006440	SE_00795	chr19	45250026	45250169	143	106.41
C006441	SE_00795	chr19	45250337	45250594	257	204.35
C006442	SE_00795	chr19	45251233	45251679	446	338.73
C006443	SE_00795	chr19	45252110	45252546	436	392.01
C006444	SE_00795	chr19	45252704	45252867	163	92.54
C006445	SE_00795	chr19	45256596	45256758	162	95.97
C006446	SE_00795	chr19	45256947	45257564	617	604.63
C006447	SE_00795	chr19	45258191	45258409	218	115.67