Super Enhancer Details

General details

Super-Enhancer ID:	SE_00796
Genomic locus:	chr2:28613534-28619168
Size/Length:	5634 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_005253
Gene Symbol:	FOSL2
Chromosome:	chr2
TSS:	28615778 (Transcription start site)
TES:	28637516 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr2:28613534-28619168
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00796

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006448	SE_00796	chr2	28613534	28613782	248	153.47
C006449	SE_00796	chr2	28614119	28614647	528	430.21
C006450	SE_00796	chr2	28614769	28615528	759	573.77
C006451	SE_00796	chr2	28615778	28615997	219	239.63
C006452	SE_00796	chr2	28616009	28617145	1136	1011.35
C006453	SE_00796	chr2	28617392	28617537	145	91.53
C006454	SE_00796	chr2	28617564	28617968	404	266.49
C006455	SE_00796	chr2	28618326	28618621	295	178.15
C006456	SE_00796	chr2	28618803	28619168	365	240.04