Super Enhancer Details

General details

Super-Enhancer ID:	SE_00797
Genomic locus:	chr14:77498754-77510307
Size/Length:	11553 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_024496
Gene Symbol:	IRF2BPL
Chromosome:	chr14
TSS:	77490885 (Transcription start site)
TES:	77495042 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr14:77498754-77510307
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00797

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006304	SE_00797	chr14	77498754	77498922	168	118.85
C006305	SE_00797	chr14	77499415	77499624	209	143.14
C006306	SE_00797	chr14	77500103	77500507	404	440.37
C006307	SE_00797	chr14	77506303	77506441	138	101.43
C006308	SE_00797	chr14	77507048	77507281	233	112.61
C006309	SE_00797	chr14	77507391	77507559	168	98.63
C006310	SE_00797	chr14	77510108	77510307	199	201.56