Super Enhancer Details

General details

Super-Enhancer ID:	SE_00800
Genomic locus:	chr17:2294923-2300955
Size/Length:	6032 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_020310
Gene Symbol:	MNT
Chromosome:	chr17
TSS:	2287353 (Transcription start site)
TES:	2304258 (Transcription end site)
Strand:	-
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:2294923-2300955
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00800

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006318	SE_00800	chr17	2294923	2295046	123	90.66
C006319	SE_00800	chr17	2296399	2296635	236	218.44
C006320	SE_00800	chr17	2296655	2297077	422	377.81
C006321	SE_00800	chr17	2299680	2300031	351	388.49
C006322	SE_00800	chr17	2300417	2300955	538	514.87