Super Enhancer Details

General details

Super-Enhancer ID:	SE_00804
Genomic locus:	chr3:187456246-187461241
Size/Length:	4995 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001130845
Gene Symbol:	BCL6
Chromosome:	chr3
TSS:	187439164 (Transcription start site)
TES:	187454285 (Transcription end site)
Strand:	-
Number of Exons:	10
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr3:187456246-187461241
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00804

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006482	SE_00804	chr3	187456246	187456536	290	165.18
C006483	SE_00804	chr3	187457030	187457188	158	115.36
C006484	SE_00804	chr3	187458035	187458311	276	185.77
C006485	SE_00804	chr3	187458858	187458977	119	90.48
C006486	SE_00804	chr3	187461039	187461241	202	160.83