Super Enhancer Details

General details

Super-Enhancer ID:	SE_00808
Genomic locus:	chr17:76338233-76349944
Size/Length:	11711 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003955
Gene Symbol:	SOCS3
Chromosome:	chr17
TSS:	76352857 (Transcription start site)
TES:	76356160 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:76338233-76349944
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00808

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006348	SE_00808	chr17	76338233	76338339	106	115.53
C006349	SE_00808	chr17	76338385	76338759	374	246.71
C006350	SE_00808	chr17	76339491	76339615	124	90.24
C006351	SE_00808	chr17	76348105	76348516	411	291.94
C006352	SE_00808	chr17	76348517	76348654	137	120.69
C006353	SE_00808	chr17	76349389	76349603	214	172.33
C006354	SE_00808	chr17	76349781	76349944	163	150.58