Super Enhancer Details

General details

Super-Enhancer ID:	SE_00813
Genomic locus:	chr17:76312114-76321480
Size/Length:	9366 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_003955
Gene Symbol:	SOCS3
Chromosome:	chr17
TSS:	76352857 (Transcription start site)
TES:	76356160 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00813

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006343	SE_00813	chr17	76312114	76312469	355	203.64
C006344	SE_00813	chr17	76318501	76318611	110	90.29
C006345	SE_00813	chr17	76319943	76320066	123	104.07
C006346	SE_00813	chr17	76320993	76321191	198	129.95
C006347	SE_00813	chr17	76321359	76321480	121	90.24