Super Enhancer Details

General details

Super-Enhancer ID:	SE_00817
Genomic locus:	chr13:114829703-114833773
Size/Length:	4070 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_023011
Gene Symbol:	UPF3A
Chromosome:	chr13
TSS:	115047058 (Transcription start site)
TES:	115071291 (Transcription end site)
Strand:	+
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr13:114829703-114833773
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00817

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006291	SE_00817	chr13	114829703	114829968	265	199.1
C006292	SE_00817	chr13	114829994	114830122	128	90.24
C006293	SE_00817	chr13	114830145	114830505	360	445.61
C006294	SE_00817	chr13	114830978	114831137	159	103.51
C006295	SE_00817	chr13	114833652	114833773	121	90.24