Super Enhancer Details

General details

Super-Enhancer ID:	SE_00818
Genomic locus:	chr17:80250802-80256826
Size/Length:	6024 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001893
Gene Symbol:	CSNK1D
Chromosome:	chr17
TSS:	80200536 (Transcription start site)
TES:	80231594 (Transcription end site)
Strand:	-
Number of Exons:	9
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr17:80250802-80256826
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00818

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006358	SE_00818	chr17	80250802	80251085	283	304.91
C006359	SE_00818	chr17	80255887	80256080	193	199.83
C006360	SE_00818	chr17	80256274	80256826	552	516.09