Super Enhancer Details

General details

Super-Enhancer ID:	SE_00819
Genomic locus:	chr2:102678541-102681695
Size/Length:	3154 bp
Genome:	Mouse -
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_145687
Gene Symbol:	MAP4K4
Chromosome:	chr2
TSS:	102314537 (Transcription start site)
TES:	102511152 (Transcription end site)
Strand:	+
Number of Exons:	30
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00819

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006462	SE_00819	chr2	102678541	102678669	128	91.75
C006463	SE_00819	chr2	102679499	102679782	283	118.71
C006464	SE_00819	chr2	102680323	102680698	375	332.95
C006465	SE_00819	chr2	102681012	102681313	301	242.84
C006466	SE_00819	chr2	102681460	102681695	235	137.75