Super Enhancer Details

General details

Super-Enhancer ID:	SE_00840
Genomic locus:	chr20:1306024-1307752
Size/Length:	1728 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_080489
Gene Symbol:	SDCBP2
Chromosome:	chr20
TSS:	1290554 (Transcription start site)
TES:	1294317 (Transcription end site)
Strand:	-
Number of Exons:	5
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr20:1306024-1307752
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00840

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006471	SE_00840	chr20	1306024	1306569	545	406.19
C006472	SE_00840	chr20	1306692	1306876	184	105.23
C006473	SE_00840	chr20	1306926	1307083	157	102.37
C006474	SE_00840	chr20	1307378	1307557	179	122.81
C006475	SE_00840	chr20	1307603	1307752	149	132.43