Super Enhancer Details

General details

Super-Enhancer ID:	SE_00841
Genomic locus:	chr9:73093968-73096212
Size/Length:	2244 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_001206
Gene Symbol:	KLF9
Chromosome:	chr9
TSS:	72999512 (Transcription start site)
TES:	73029573 (Transcription end site)
Strand:	-
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr9:73093968-73096212
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00841

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006554	SE_00841	chr9	73093968	73094093	125	94.7
C006555	SE_00841	chr9	73094319	73094484	165	94.62
C006556	SE_00841	chr9	73094699	73095163	464	326.38
C006557	SE_00841	chr9	73095845	73096212	367	340.77