Super Enhancer Details

General details

Super-Enhancer ID:	SE_00843
Genomic locus:	chr7:1572815-1577544
Size/Length:	4729 bp
Genome:	Human - hg19
Cell/Tissue:	Adipose Tissue
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM906416
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002360
Gene Symbol:	MAFK
Chromosome:	chr7
TSS:	1570367 (Transcription start site)
TES:	1582679 (Transcription end site)
Strand:	+
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

>chr7:1572815-1577544
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_00843

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C006529	SE_00843	chr7	1572815	1573037	222	149.87
C006530	SE_00843	chr7	1576536	1576720	184	149.03
C006531	SE_00843	chr7	1577271	1577544	273	229.15