Super Enhancer Details

General details

Super-Enhancer ID:	SE_04545
Genomic locus:	chr11:46917130-46943170
Size/Length:	26040 bp
Genome:	Mouse -
Cell/Tissue:	Brain Anterior Caudate
Factor(s) Used:	- (Used to define enhancers) - (Used to rank SEs)
Input/WCE:	GSM772826
Reference:	Hnisz D. et al., 2013 Cell - 24119843

Associated gene details

RefSeq ID:	NM_002334
Gene Symbol:	LRP4
Chromosome:	chr11
TSS:	46878267 (Transcription start site)
TES:	46940173 (Transcription end site)
Strand:	-
Number of Exons:	38
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 2, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window. In cases where experimentally verified enhancer-gene assignments were available, genes were assigned to enhancers based on those studies.

FASTA sequence

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Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - SE_04545

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
C037031	SE_04545	chr11	46917130	46918328	1198	182.23
C037032	SE_04545	chr11	46922470	46923467	997	257.19
C037033	SE_04545	chr11	46923737	46927327	3590	1437.81
C037034	SE_04545	chr11	46927869	46929352	1483	338.29
C037035	SE_04545	chr11	46929775	46931060	1285	159.13
C037036	SE_04545	chr11	46933609	46937165	3556	835.46
C037037	SE_04545	chr11	46937799	46940047	2248	968.58
C037038	SE_04545	chr11	46940136	46943170	3034	968.84