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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10014
Genomic locus: chr4:132581697-132701011
Size/Length: 119314 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_153423
Gene Symbol: Wasf2
Chromosome: chr4
TSS: 132686547 (Transcription start site)
TES: 132754245 (Transcription end site)
Strand: +
Number of Exons: 9
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr4:132581697-132701011
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10014

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036177 mSE_10014 chr4 132581697 132584994 3297 626.34
CM036178 mSE_10014 chr4 132588309 132589495 1186 199.77
CM036179 mSE_10014 chr4 132593746 132602410 8664 3100
CM036180 mSE_10014 chr4 132607040 132613489 6449 982.87
CM036181 mSE_10014 chr4 132613534 132614599 1065 388.04
CM036182 mSE_10014 chr4 132623468 132628062 4594 1730.51
CM036183 mSE_10014 chr4 132628070 132630768 2698 177.35
CM036184 mSE_10014 chr4 132634329 132637005 2676 419.57
CM036185 mSE_10014 chr4 132638066 132638804 738 90.67
CM036186 mSE_10014 chr4 132639368 132641202 1834 349.88
CM036187 mSE_10014 chr4 132647377 132650068 2691 1213.67
CM036188 mSE_10014 chr4 132650556 132652004 1448 758.52
CM036189 mSE_10014 chr4 132658424 132659976 1552 1610.61
CM036190 mSE_10014 chr4 132659991 132661804 1813 1026.69
CM036191 mSE_10014 chr4 132663077 132666887 3810 1404.26
CM036192 mSE_10014 chr4 132668076 132670164 2088 295.54
CM036193 mSE_10014 chr4 132670579 132679821 9242 3100
CM036194 mSE_10014 chr4 132684895 132688574 3679 1130.98
CM036195 mSE_10014 chr4 132690620 132691539 919 117.86
CM036196 mSE_10014 chr4 132700341 132701011 670 98.34