Toggle navigation

  • Home
  • Browse Database
  • Detailed Search
  • Visualize & Send Data
  • Download Data
  • Overlap Analysis
  • Statistics
  • Documentation
  • Data Sources
  • Submit Data
  • Contact Us
  • News & Tweets

Follow @dbSUPER_THU

Super Enhancer Details

  1. Home
  2. Browse
  3. Details

General details

Super-Enhancer ID: mSE_10015
Genomic locus: chr1:88336207-88429352
Size/Length: 93145 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008972
Gene Symbol: Ptma
Chromosome: chr1
TSS: 88423310 (Transcription start site)
TES: 88427273 (Transcription end site)
Strand: +
Number of Exons: 5
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr1:88336207-88429352
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10015

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM033393 mSE_10015 chr1 88336207 88341258 5051 1478.54
CM033394 mSE_10015 chr1 88344057 88345215 1158 318.75
CM033395 mSE_10015 chr1 88353228 88353818 590 147.74
CM033396 mSE_10015 chr1 88360233 88362411 2178 1260.85
CM033397 mSE_10015 chr1 88363335 88364499 1164 323.8
CM033398 mSE_10015 chr1 88366570 88370826 4256 3100
CM033399 mSE_10015 chr1 88377368 88379289 1921 361.45
CM033400 mSE_10015 chr1 88383220 88384191 971 267.78
CM033401 mSE_10015 chr1 88384308 88389863 5555 3100
CM033402 mSE_10015 chr1 88390195 88390980 785 91.75
CM033403 mSE_10015 chr1 88393418 88395921 2503 814.4
CM033404 mSE_10015 chr1 88397077 88403337 6260 3100
CM033405 mSE_10015 chr1 88406802 88407785 983 93.84
CM033406 mSE_10015 chr1 88418125 88419791 1666 571.46
CM033407 mSE_10015 chr1 88419822 88421985 2163 396.1
CM033408 mSE_10015 chr1 88422026 88423119 1093 920.89
CM033409 mSE_10015 chr1 88423284 88426662 3378 1137.1
CM033410 mSE_10015 chr1 88427252 88429352 2100 1480.81