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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10016
Genomic locus: chr9:114408691-114495700
Size/Length: 87009 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001042503
Gene Symbol: Trim71
Chromosome: chr9
TSS: 114420390 (Transcription start site)
TES: 114473487 (Transcription end site)
Strand: -
Number of Exons: 4
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr9:114408691-114495700
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10016

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037578 mSE_10016 chr9 114408691 114411037 2346 2155.22
CM037579 mSE_10016 chr9 114411664 114412661 997 125.09
CM037580 mSE_10016 chr9 114415472 114416276 804 145.58
CM037581 mSE_10016 chr9 114421701 114423547 1846 120.75
CM037582 mSE_10016 chr9 114423738 114427738 4000 1182.29
CM037583 mSE_10016 chr9 114427788 114429411 1623 440.62
CM037584 mSE_10016 chr9 114430980 114432141 1161 135.68
CM037585 mSE_10016 chr9 114432197 114433261 1064 113.74
CM037586 mSE_10016 chr9 114433365 114434730 1365 95.42
CM037587 mSE_10016 chr9 114434754 114437263 2509 1012.2
CM037588 mSE_10016 chr9 114437504 114442603 5099 2773.83
CM037589 mSE_10016 chr9 114442665 114445082 2417 421.41
CM037590 mSE_10016 chr9 114445501 114448024 2523 802.01
CM037591 mSE_10016 chr9 114449132 114451703 2571 422.23
CM037592 mSE_10016 chr9 114453864 114456031 2167 187.94
CM037593 mSE_10016 chr9 114456069 114461544 5475 1097.92
CM037594 mSE_10016 chr9 114462632 114464954 2322 256.03
CM037595 mSE_10016 chr9 114465298 114468331 3033 1947.17
CM037596 mSE_10016 chr9 114469516 114474751 5235 2023.45
CM037597 mSE_10016 chr9 114477281 114478364 1083 493.88
CM037598 mSE_10016 chr9 114478437 114478843 406 135.42
CM037599 mSE_10016 chr9 114487555 114488955 1400 645.15
CM037600 mSE_10016 chr9 114488981 114489747 766 103.66
CM037601 mSE_10016 chr9 114489883 114495700 5817 3100