Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10017
Genomic locus:	chr17:71175639-71224572
Size/Length:	48933 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009372
Gene Symbol:	Tgif1
Chromosome:	chr17
TSS:	71193544 (Transcription start site)
TES:	71200550 (Transcription end site)
Strand:	-
Number of Exons:	3
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:71175639-71224572
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10017

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035177	mSE_10017	chr17	71175639	71183338	7699	3100
CM035178	mSE_10017	chr17	71183438	71185235	1797	1132.97
CM035179	mSE_10017	chr17	71185453	71186638	1185	888.16
CM035180	mSE_10017	chr17	71186830	71187729	899	154.64
CM035181	mSE_10017	chr17	71187842	71190203	2361	898.19
CM035182	mSE_10017	chr17	71190770	71191833	1063	376.33
CM035183	mSE_10017	chr17	71192014	71193619	1605	310.59
CM035184	mSE_10017	chr17	71193930	71195169	1239	324.44
CM035185	mSE_10017	chr17	71195322	71196107	785	301.37
CM035186	mSE_10017	chr17	71196960	71200598	3638	2464.94
CM035187	mSE_10017	chr17	71200617	71204058	3441	2835.73
CM035188	mSE_10017	chr17	71212195	71216400	4205	3100
CM035189	mSE_10017	chr17	71216462	71217915	1453	276.79
CM035190	mSE_10017	chr17	71219149	71223607	4458	3100
CM035191	mSE_10017	chr17	71223857	71224572	715	90.39