Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10018
Genomic locus:	chr11:20015951-20145325
Size/Length:	129374 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008996
Gene Symbol:	Rab1
Chromosome:	chr11
TSS:	20101604 (Transcription start site)
TES:	20126859 (Transcription end site)
Strand:	+
Number of Exons:	6
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr11:20015951-20145325
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10018

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033847	mSE_10018	chr11	20015951	20017684	1733	384.1
CM033848	mSE_10018	chr11	20026697	20027793	1096	236.27
CM033849	mSE_10018	chr11	20032938	20034592	1654	486.19
CM033850	mSE_10018	chr11	20036597	20037273	676	135.74
CM033851	mSE_10018	chr11	20037420	20039350	1930	2410.47
CM033852	mSE_10018	chr11	20039386	20041396	2010	2203.98
CM033853	mSE_10018	chr11	20041628	20042329	701	127.05
CM033854	mSE_10018	chr11	20043137	20043846	709	113.38
CM033855	mSE_10018	chr11	20044183	20047016	2833	3100
CM033856	mSE_10018	chr11	20047080	20047510	430	107.13
CM033857	mSE_10018	chr11	20047676	20048470	794	281.97
CM033858	mSE_10018	chr11	20051911	20052768	857	217.32
CM033859	mSE_10018	chr11	20053431	20054004	573	211.55
CM033860	mSE_10018	chr11	20058166	20059876	1710	284.55
CM033861	mSE_10018	chr11	20061778	20062733	955	286.72
CM033862	mSE_10018	chr11	20062946	20067277	4331	3100
CM033863	mSE_10018	chr11	20067666	20068603	937	239.96
CM033864	mSE_10018	chr11	20069004	20069651	647	135.94
CM033865	mSE_10018	chr11	20073262	20074129	867	144.58
CM033866	mSE_10018	chr11	20078220	20079484	1264	331.01
CM033867	mSE_10018	chr11	20086837	20087627	790	207.29
CM033868	mSE_10018	chr11	20094575	20095481	906	388.94
CM033869	mSE_10018	chr11	20096302	20097113	811	212.57
CM033870	mSE_10018	chr11	20099434	20100194	760	122.05
CM033871	mSE_10018	chr11	20100368	20101023	655	314.15
CM033872	mSE_10018	chr11	20108147	20108639	492	112.58
CM033873	mSE_10018	chr11	20113556	20114168	612	174.26
CM033874	mSE_10018	chr11	20123444	20125121	1677	1442.11
CM033875	mSE_10018	chr11	20125501	20126523	1022	575.83
CM033876	mSE_10018	chr11	20127221	20133364	6143	3100
CM033877	mSE_10018	chr11	20133966	20135332	1366	372.79
CM033878	mSE_10018	chr11	20136298	20137782	1484	1064.98
CM033879	mSE_10018	chr11	20138390	20139807	1417	192.7
CM033880	mSE_10018	chr11	20142439	20143966	1527	245.23
CM033881	mSE_10018	chr11	20144247	20145325	1078	341.06