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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10019
Genomic locus: chr8:34979668-35054424
Size/Length: 74756 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_001286168
Gene Symbol: Rbpms
Chromosome: chr8
TSS: 34893115 (Transcription start site)
TES: 35040335 (Transcription end site)
Strand: -
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr8:34979668-35054424
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10019

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM037128 mSE_10019 chr8 34979668 34983733 4065 1096.26
CM037129 mSE_10019 chr8 34984760 34986413 1653 218.1
CM037130 mSE_10019 chr8 34989304 34991147 1843 345.43
CM037131 mSE_10019 chr8 34991811 34992860 1049 97.74
CM037132 mSE_10019 chr8 34993386 34993845 459 98.33
CM037133 mSE_10019 chr8 34998308 34998795 487 101.63
CM037134 mSE_10019 chr8 34999343 35000023 680 193.18
CM037135 mSE_10019 chr8 35002605 35003245 640 94.74
CM037136 mSE_10019 chr8 35006986 35007864 878 131.74
CM037137 mSE_10019 chr8 35008004 35010885 2881 651.6
CM037138 mSE_10019 chr8 35012098 35012605 507 114.15
CM037139 mSE_10019 chr8 35012621 35015753 3132 3100
CM037140 mSE_10019 chr8 35015875 35018280 2405 1324.66
CM037141 mSE_10019 chr8 35018282 35021519 3237 1432.74
CM037142 mSE_10019 chr8 35021632 35024811 3179 3100
CM037143 mSE_10019 chr8 35024855 35029494 4639 3100
CM037144 mSE_10019 chr8 35029762 35031854 2092 1254.64
CM037145 mSE_10019 chr8 35032501 35033069 568 99.08
CM037146 mSE_10019 chr8 35033128 35033754 626 93.66
CM037147 mSE_10019 chr8 35037838 35038360 522 117.76
CM037148 mSE_10019 chr8 35038646 35039074 428 107.49
CM037149 mSE_10019 chr8 35039136 35040316 1180 482.31
CM037150 mSE_10019 chr8 35040507 35043011 2504 1043.37
CM037151 mSE_10019 chr8 35044415 35044961 546 135.55
CM037152 mSE_10019 chr8 35053261 35054424 1163 235.89