Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10020
Genomic locus:	chr3:95436370-95482375
Size/Length:	46005 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_008562
Gene Symbol:	Mcl1
Chromosome:	chr3
TSS:	95462642 (Transcription start site)
TES:	95467101 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr3:95436370-95482375
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10020

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035900	mSE_10020	chr3	95436370	95437475	1105	108.23
CM035901	mSE_10020	chr3	95438651	95440489	1838	655.6
CM035902	mSE_10020	chr3	95443804	95444640	836	203.1
CM035903	mSE_10020	chr3	95445599	95446274	675	107.12
CM035904	mSE_10020	chr3	95446891	95447752	861	100.27
CM035905	mSE_10020	chr3	95448022	95449187	1165	327.85
CM035906	mSE_10020	chr3	95449226	95450668	1442	223.53
CM035907	mSE_10020	chr3	95452002	95452927	925	93.19
CM035908	mSE_10020	chr3	95453233	95460316	7083	3100
CM035909	mSE_10020	chr3	95461097	95465396	4299	1592.27
CM035910	mSE_10020	chr3	95465695	95474090	8395	3100
CM035911	mSE_10020	chr3	95474671	95478248	3577	2933.9
CM035912	mSE_10020	chr3	95478272	95482375	4103	2986.14