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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10021
Genomic locus: chr18:65721269-65800843
Size/Length: 79574 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_207255
Gene Symbol: Zfp532
Chromosome: chr18
TSS: 65739883 (Transcription start site)
TES: 65849090 (Transcription end site)
Strand: +
Number of Exons: 6
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr18:65721269-65800843
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10021

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035275 mSE_10021 chr18 65721269 65721854 585 141.34
CM035276 mSE_10021 chr18 65723502 65724413 911 417.84
CM035277 mSE_10021 chr18 65724663 65728055 3392 2433.53
CM035278 mSE_10021 chr18 65728136 65728751 615 124.2
CM035279 mSE_10021 chr18 65732762 65734088 1326 335.29
CM035280 mSE_10021 chr18 65734578 65740548 5970 3100
CM035281 mSE_10021 chr18 65740595 65749350 8755 2578.74
CM035282 mSE_10021 chr18 65749630 65755784 6154 2810.98
CM035283 mSE_10021 chr18 65756297 65758862 2565 474.51
CM035284 mSE_10021 chr18 65759044 65759901 857 188.55
CM035285 mSE_10021 chr18 65762906 65765622 2716 512.18
CM035286 mSE_10021 chr18 65765695 65766561 866 430.71
CM035287 mSE_10021 chr18 65767062 65768403 1341 266.74
CM035288 mSE_10021 chr18 65768753 65774810 6057 2728.46
CM035289 mSE_10021 chr18 65775405 65777818 2413 1042.6
CM035290 mSE_10021 chr18 65779858 65782013 2155 216.32
CM035291 mSE_10021 chr18 65790225 65791113 888 171.51
CM035292 mSE_10021 chr18 65794487 65795173 686 106.04
CM035293 mSE_10021 chr18 65795291 65796260 969 102.42
CM035294 mSE_10021 chr18 65798424 65800843 2419 514.35