Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10022
Genomic locus:	chr8:109123059-109171498
Size/Length:	48439 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_009864
Gene Symbol:	Cdh1
Chromosome:	chr8
TSS:	109127267 (Transcription start site)
TES:	109194146 (Transcription end site)
Strand:	+
Number of Exons:	16
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:109123059-109171498
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10022

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037318	mSE_10022	chr8	109123059	109123693	634	91.36
CM037319	mSE_10022	chr8	109126514	109128769	2255	1059.41
CM037320	mSE_10022	chr8	109128953	109131937	2984	583.49
CM037321	mSE_10022	chr8	109132023	109146672	14649	3100
CM037322	mSE_10022	chr8	109151183	109154563	3380	1296.86
CM037323	mSE_10022	chr8	109154880	109157392	2512	850.9
CM037324	mSE_10022	chr8	109157435	109159059	1624	202.53
CM037325	mSE_10022	chr8	109160178	109161742	1564	271.94
CM037326	mSE_10022	chr8	109163705	109167231	3526	942
CM037327	mSE_10022	chr8	109167950	109171498	3548	820.89