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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10023
Genomic locus: chr2:165792428-165870909
Size/Length: 78481 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008679
Gene Symbol: Ncoa3
Chromosome: chr2
TSS: 165818136 (Transcription start site)
TES: 165898742 (Transcription end site)
Strand: +
Number of Exons: 23
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr2:165792428-165870909
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10023

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035721 mSE_10023 chr2 165792428 165797220 4792 3100
CM035722 mSE_10023 chr2 165801532 165805529 3997 3100
CM035723 mSE_10023 chr2 165805581 165809448 3867 3100
CM035724 mSE_10023 chr2 165810165 165811703 1538 260.94
CM035725 mSE_10023 chr2 165812185 165814081 1896 784.21
CM035726 mSE_10023 chr2 165815750 165816602 852 132.06
CM035727 mSE_10023 chr2 165816729 165819238 2509 690.53
CM035728 mSE_10023 chr2 165824399 165825306 907 180.57
CM035729 mSE_10023 chr2 165826167 165827847 1680 381.27
CM035730 mSE_10023 chr2 165832261 165833334 1073 195.79
CM035731 mSE_10023 chr2 165833377 165835745 2368 856.44
CM035732 mSE_10023 chr2 165836288 165838020 1732 1482.2
CM035733 mSE_10023 chr2 165838561 165839338 777 116.67
CM035734 mSE_10023 chr2 165839610 165840270 660 113.32
CM035735 mSE_10023 chr2 165842799 165843505 706 144.9
CM035736 mSE_10023 chr2 165846177 165847299 1122 256.49
CM035737 mSE_10023 chr2 165847641 165848217 576 158.47
CM035738 mSE_10023 chr2 165852178 165852814 636 109.02
CM035739 mSE_10023 chr2 165853184 165853859 675 121.16
CM035740 mSE_10023 chr2 165860264 165861049 785 150.83
CM035741 mSE_10023 chr2 165870153 165870909 756 143.96