Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10024
Genomic locus:	chr1:138566183-138604934
Size/Length:	38751 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001160251
Gene Symbol:	Zfp281
Chromosome:	chr1
TSS:	138521477 (Transcription start site)
TES:	138526968 (Transcription end site)
Strand:	+
Number of Exons:	2
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:138566183-138604934
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10024

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033492	mSE_10024	chr1	138566183	138581575	15392	3100
CM033493	mSE_10024	chr1	138581664	138583674	2010	933.49
CM033494	mSE_10024	chr1	138584934	138586106	1172	435.38
CM033495	mSE_10024	chr1	138586369	138588790	2421	2274.81
CM033496	mSE_10024	chr1	138588875	138590775	1900	979.33
CM033497	mSE_10024	chr1	138591220	138594110	2890	3100
CM033498	mSE_10024	chr1	138594193	138598011	3818	3100
CM033499	mSE_10024	chr1	138603109	138604934	1825	732.28