Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10025
Genomic locus:	chr12:88207311-88284868
Size/Length:	77557 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	6430527G18Rik
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:88207311-88284868
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10025

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034357	mSE_10025	chr12	88207311	88209892	2581	1723.57
CM034358	mSE_10025	chr12	88212097	88214047	1950	456.45
CM034359	mSE_10025	chr12	88219125	88221255	2130	588.57
CM034360	mSE_10025	chr12	88223244	88225880	2636	826.28
CM034361	mSE_10025	chr12	88226046	88227097	1051	307.38
CM034362	mSE_10025	chr12	88227897	88232324	4427	1681.02
CM034363	mSE_10025	chr12	88234179	88236694	2515	946.61
CM034364	mSE_10025	chr12	88236955	88237392	437	139.65
CM034365	mSE_10025	chr12	88237442	88242460	5018	2305.68
CM034366	mSE_10025	chr12	88244491	88246325	1834	581.37
CM034367	mSE_10025	chr12	88246384	88248437	2053	402.8
CM034368	mSE_10025	chr12	88249503	88250370	867	225.52
CM034369	mSE_10025	chr12	88250429	88251801	1372	202.65
CM034370	mSE_10025	chr12	88252034	88261408	9374	3100
CM034371	mSE_10025	chr12	88271440	88274909	3469	2092.28
CM034372	mSE_10025	chr12	88284094	88284868	774	112.69