Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10026
Genomic locus:	chr2:20553377-20597197
Size/Length:	43820 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_178059
Gene Symbol:	Etl4
Chromosome:	chr2
TSS:	20431673 (Transcription start site)
TES:	20732162 (Transcription end site)
Strand:	+
Number of Exons:	19
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr2:20553377-20597197
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10026

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035479	mSE_10026	chr2	20553377	20553930	553	143.05
CM035480	mSE_10026	chr2	20562428	20562859	431	110.35
CM035481	mSE_10026	chr2	20563310	20564028	718	125.55
CM035482	mSE_10026	chr2	20564389	20564995	606	133.05
CM035483	mSE_10026	chr2	20569818	20580038	10220	3100
CM035484	mSE_10026	chr2	20580069	20582248	2179	872.88
CM035485	mSE_10026	chr2	20582712	20583331	619	123.63
CM035486	mSE_10026	chr2	20583455	20585923	2468	1497.49
CM035487	mSE_10026	chr2	20586010	20589203	3193	3100
CM035488	mSE_10026	chr2	20589258	20589978	720	481.93
CM035489	mSE_10026	chr2	20590216	20595945	5729	3100
CM035490	mSE_10026	chr2	20595991	20597197	1206	500.09