Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10027
Genomic locus:	chr12:87795610-87858574
Size/Length:	62964 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_001159500
Gene Symbol:	Esrrb
Chromosome:	chr12
TSS:	87702066 (Transcription start site)
TES:	87862578 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr12:87795610-87858574
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10027

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM034330	mSE_10027	chr12	87795610	87796748	1138	108.61
CM034331	mSE_10027	chr12	87804802	87806550	1748	443.74
CM034332	mSE_10027	chr12	87807258	87808146	888	143.71
CM034333	mSE_10027	chr12	87808207	87809922	1715	220.4
CM034334	mSE_10027	chr12	87811034	87813456	2422	578.58
CM034335	mSE_10027	chr12	87813631	87821444	7813	2140.33
CM034336	mSE_10027	chr12	87822345	87825957	3612	425.26
CM034337	mSE_10027	chr12	87827065	87828307	1242	225.99
CM034338	mSE_10027	chr12	87828726	87831173	2447	685.15
CM034339	mSE_10027	chr12	87831235	87832891	1656	258.09
CM034340	mSE_10027	chr12	87832945	87840573	7628	3113.99
CM034341	mSE_10027	chr12	87841153	87842321	1168	1656.08
CM034342	mSE_10027	chr12	87842556	87849642	7086	3100
CM034343	mSE_10027	chr12	87853703	87854549	846	97.47
CM034344	mSE_10027	chr12	87856898	87858574	1676	274.84