Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10028
Genomic locus:	chr8:87156713-87211065
Size/Length:	54352 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_010499
Gene Symbol:	Ier2
Chromosome:	chr8
TSS:	87185229 (Transcription start site)
TES:	87186751 (Transcription end site)
Strand:	-
Number of Exons:	1
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr8:87156713-87211065
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10028

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037241	mSE_10028	chr8	87156713	87159636	2923	662.28
CM037242	mSE_10028	chr8	87161796	87162761	965	111.07
CM037243	mSE_10028	chr8	87165968	87167155	1187	180.43
CM037244	mSE_10028	chr8	87169843	87171927	2084	1230.9
CM037245	mSE_10028	chr8	87172898	87173576	678	114.92
CM037246	mSE_10028	chr8	87173622	87175852	2230	3100
CM037247	mSE_10028	chr8	87176147	87176651	504	123.97
CM037248	mSE_10028	chr8	87177282	87179796	2514	3100
CM037249	mSE_10028	chr8	87179809	87188012	8203	3100
CM037250	mSE_10028	chr8	87188058	87190221	2163	3100
CM037251	mSE_10028	chr8	87191837	87193250	1413	371.02
CM037252	mSE_10028	chr8	87193583	87194511	928	210.28
CM037253	mSE_10028	chr8	87202226	87202910	684	107.44
CM037254	mSE_10028	chr8	87209524	87211065	1541	1471.17