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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10029
Genomic locus: chr2:162855131-162922049
Size/Length: 66918 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_008652
Gene Symbol: Mybl2
Chromosome: chr2
TSS: 162880370 (Transcription start site)
TES: 162910423 (Transcription end site)
Strand: +
Number of Exons: 14
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr2:162855131-162922049
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10029

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM035677 mSE_10029 chr2 162855131 162855837 706 198.68
CM035678 mSE_10029 chr2 162855952 162860931 4979 3100
CM035679 mSE_10029 chr2 162861394 162863619 2225 444.73
CM035680 mSE_10029 chr2 162874221 162874847 626 138.96
CM035681 mSE_10029 chr2 162875979 162883655 7676 3100
CM035682 mSE_10029 chr2 162883746 162887819 4073 2717.01
CM035683 mSE_10029 chr2 162887900 162890543 2643 732.6
CM035684 mSE_10029 chr2 162890604 162892453 1849 778.65
CM035685 mSE_10029 chr2 162892477 162893495 1018 251.14
CM035686 mSE_10029 chr2 162893498 162894831 1333 242.29
CM035687 mSE_10029 chr2 162896922 162898440 1518 238.2
CM035688 mSE_10029 chr2 162898511 162904248 5737 1145.3
CM035689 mSE_10029 chr2 162904540 162905943 1403 220.13
CM035690 mSE_10029 chr2 162907407 162909026 1619 332.68
CM035691 mSE_10029 chr2 162909338 162911719 2381 938.31
CM035692 mSE_10029 chr2 162915474 162915956 482 107.12
CM035693 mSE_10029 chr2 162921295 162922049 754 153.36