Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10030
Genomic locus:	chr9:58087607-58128917
Size/Length:	41310 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_026942
Gene Symbol:	Stoml1
Chromosome:	chr9
TSS:	58100970 (Transcription start site)
TES:	58110331 (Transcription end site)
Strand:	+
Number of Exons:	7
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr9:58087607-58128917
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10030

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM037474	mSE_10030	chr9	58087607	58088819	1212	224.72
CM037475	mSE_10030	chr9	58088927	58092449	3522	1472.51
CM037476	mSE_10030	chr9	58094466	58099049	4583	3100
CM037477	mSE_10030	chr9	58101030	58101783	753	243.83
CM037478	mSE_10030	chr9	58102292	58104261	1969	373.3
CM037479	mSE_10030	chr9	58113388	58115762	2374	1183.96
CM037480	mSE_10030	chr9	58115998	58116709	711	320.27
CM037481	mSE_10030	chr9	58116805	58117745	940	297.79
CM037482	mSE_10030	chr9	58117773	58119260	1487	1077.97
CM037483	mSE_10030	chr9	58119331	58124587	5256	3100
CM037484	mSE_10030	chr9	58124690	58125372	682	379.08
CM037485	mSE_10030	chr9	58125400	58127154	1754	1787.39
CM037486	mSE_10030	chr9	58127207	58128917	1710	3100