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Super Enhancer Details

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General details

Super-Enhancer ID: mSE_10031
Genomic locus: chr6:39342678-39406570
Size/Length: 63892 bp
Genome: Mouse - mm9
Cell/Tissue: Embryonic stem cells
Factor(s) Used: H3K27ac - (Used to define enhancers)
H3K27ac - (Used to rank SEs)
Input/WCE: GSM723020
Reference: Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID: NM_018810
Gene Symbol: Mkrn1
Chromosome: chr6
TSS: 39347819 (Transcription start site)
TES: 39370368 (Transcription end site)
Strand: -
Number of Exons: 8
External Links:

Software and parameters used

Read Mapping: Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling: MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb
Enhancer-gene Assignment: Genes were assigned to SEs within a 50 kb window.

FASTA sequence



>chr6:39342678-39406570
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10031

Constituent ID SE ID Chrom Start End Constituent Size MACS score
CM036567 mSE_10031 chr6 39342678 39343459 781 141.42
CM036568 mSE_10031 chr6 39343522 39344643 1121 342.82
CM036569 mSE_10031 chr6 39344975 39347351 2376 971.04
CM036570 mSE_10031 chr6 39347379 39350590 3211 1914.96
CM036571 mSE_10031 chr6 39350793 39353008 2215 651.79
CM036572 mSE_10031 chr6 39353225 39354205 980 183.67
CM036573 mSE_10031 chr6 39354987 39355677 690 113.38
CM036574 mSE_10031 chr6 39356287 39357259 972 290.93
CM036575 mSE_10031 chr6 39361320 39362039 719 151.44
CM036576 mSE_10031 chr6 39363668 39365399 1731 397.84
CM036577 mSE_10031 chr6 39365888 39372474 6586 3100
CM036578 mSE_10031 chr6 39372524 39374354 1830 501.26
CM036579 mSE_10031 chr6 39375344 39376002 658 146.4
CM036580 mSE_10031 chr6 39376250 39377133 883 235.92
CM036581 mSE_10031 chr6 39377352 39378551 1199 439.75
CM036582 mSE_10031 chr6 39378608 39379956 1348 392.88
CM036583 mSE_10031 chr6 39380182 39381299 1117 535.72
CM036584 mSE_10031 chr6 39381515 39383067 1552 765.39
CM036585 mSE_10031 chr6 39383169 39386647 3478 1534.46
CM036586 mSE_10031 chr6 39387952 39390347 2395 864.87
CM036587 mSE_10031 chr6 39391729 39393241 1512 1044.28
CM036588 mSE_10031 chr6 39393352 39394558 1206 417.18
CM036589 mSE_10031 chr6 39394702 39396010 1308 1132.44
CM036590 mSE_10031 chr6 39396028 39400290 4262 3100
CM036591 mSE_10031 chr6 39400402 39401104 702 116.67
CM036592 mSE_10031 chr6 39401397 39402229 832 137.17
CM036593 mSE_10031 chr6 39404488 39406570 2082 298.13