Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10033
Genomic locus:	chr1:84842125-84888388
Size/Length:	46263 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:	NM_025386
Gene Symbol:	Fbxo36
Chromosome:	chr1
TSS:	84836415 (Transcription start site)
TES:	84897061 (Transcription end site)
Strand:	+
Number of Exons:	4
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr1:84842125-84888388
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10033

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM033376	mSE_10033	chr1	84842125	84849686	7561	3100
CM033377	mSE_10033	chr1	84852431	84853461	1030	135.48
CM033378	mSE_10033	chr1	84853545	84854083	538	96.81
CM033379	mSE_10033	chr1	84855289	84855836	547	158.14
CM033380	mSE_10033	chr1	84855975	84856769	794	463.39
CM033381	mSE_10033	chr1	84856814	84862010	5196	3100
CM033382	mSE_10033	chr1	84862213	84862758	545	98.24
CM033383	mSE_10033	chr1	84862815	84867019	4204	3100
CM033384	mSE_10033	chr1	84867210	84870142	2932	3100
CM033385	mSE_10033	chr1	84870234	84872022	1788	1190.85
CM033386	mSE_10033	chr1	84876061	84876585	524	126.2
CM033387	mSE_10033	chr1	84877222	84879785	2563	1193.81
CM033388	mSE_10033	chr1	84883776	84884728	952	226.31
CM033389	mSE_10033	chr1	84885142	84888388	3246	2683.58