Super Enhancer Details

General details

Super-Enhancer ID:	mSE_10034
Genomic locus:	chr17:66788053-66836315
Size/Length:	48262 bp
Genome:	Mouse - mm9
Cell/Tissue:	Embryonic stem cells
Factor(s) Used:	H3K27ac - (Used to define enhancers) H3K27ac - (Used to rank SEs)
Input/WCE:	GSM723020
Reference:	Khan A. et al., 2016 Nucleic Acids Res - 26438538

Associated gene details

RefSeq ID:
Gene Symbol:	1110012J17Rik
Chromosome:
TSS:	(Transcription start site)
TES:	(Transcription end site)
Strand:
Number of Exons:
External Links:

Software and parameters used

Stitching Distance:	12.5 kb
Read Mapping:	Bowtie (version 0.12.9) with parameters -k 2, -m 3, -n 2, -best.
Peak Calling:	MACS (version 1.4.1) with parameters -p 1e-9,-keep-dup = auto, -w -S -space = 50
TSS Exclusive Zone:	+/- 2 kb
Enhancer-gene Assignment:	Genes were assigned to SEs within a 50 kb window.

FASTA sequence

>chr17:66788053-66836315
Sequence preview unavailable; use Download FASTA.

Wiggle files

Download Wiggle (WIG) files, generated by original data source.

Constituents of Super-enhancer - mSE_10034

Constituent ID	SE ID	Chrom	Start	End	Constituent Size	MACS score
CM035157	mSE_10034	chr17	66788053	66789652	1599	1217.18
CM035158	mSE_10034	chr17	66795644	66796569	925	113.43
CM035159	mSE_10034	chr17	66806873	66807438	565	145.18
CM035160	mSE_10034	chr17	66807781	66808782	1001	191.89
CM035161	mSE_10034	chr17	66816011	66816608	597	143.74
CM035162	mSE_10034	chr17	66818185	66822203	4018	3100
CM035163	mSE_10034	chr17	66822215	66824393	2178	1170.28
CM035164	mSE_10034	chr17	66824402	66825159	757	120.33
CM035165	mSE_10034	chr17	66827466	66836315	8849	3100